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Thank you in advance! ❤️
Protein Query
Search the RCSB Protein DataBase for matching Amino Acis sequences and the address of a corresponding .pdb file.
Inputs
| Name | ID | Description | Type |
|---|---|---|---|
| Text | AA | Contains a collection of text fragments | String |
| Sequence Match Percentage | S% | Contains a collection of floating point numbers | Number |
| Length Match Percentage | L% | Contains a collection of floating point numbers | Number |
| Hit Index | i | Optional hit index, if you would like to choose a particular result, if you would like to select a particular protein. If left empty, the highest scoring match withing the specified length threshold will be selected. | StructurePath |
| Open Web Page | W | If set to True a web page will open in the default browser showing more infomation on the selected protein on the RCSB site. If no match is found, the user is directed to Robetta, a site where the structure of the sequence can be predicted (requires account login and (typically many hours) to process. | Boolean |
Outputs
| Name | ID | Description | Type |
|---|---|---|---|
| PDB URL | PDB | URL on rcsb.org of the .pdb file associated with the matching protein. | String |
| All Proteins | M | Best matching protein accorning to scores, and length, and/or selection. 0 = Hit Index, 1 = ID, 2 = Score, 3 = Length | Goo |
| All Proteins | A | All matching proteins provided by RCSB. 0 = Hit Index, 1 = ID, 2 = Score, 3 = Length | Goo |
| Web View Message | W | message output regarding web view | Goo |
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