Community documentation for Grasshopper add-ons & plugins
Translation
Translates RNA to amino acid chain with options for finding the proper reading frame
Inputs
| Name | ID | Description | Type |
|---|---|---|---|
| RNA | RNA | Contains a collection of text fragments | String |
| Domain from larger sequence | Sub | optional domain from the larger sequence to establish locations withing the broader context | Interval |
| Ribosome Binding Site Sequence | RBS | Ribosome Binding Site Sequence as RNA or DNA | String |
| shift frame | Shift | shift the frame 0,1,or 2 nucleuotides | Integer |
| Start Point | Start | 0=beginning of input RNA, 1=1st start codon, 2= 2nd start codon, etc | Integer |
| Stop Point | Stop | 0=end of input RNA, 1=1st stop codon, 2= 2nd stop codon, etc | Integer |
| Verbosity | V | input an integer1-2 to determine the output version of the amino acid identification. 0=one letter, 1=three letter, 2= word | Integer |
Outputs
| Name | ID | Description | Type |
|---|---|---|---|
| Amino Acid Sequence | AA | Filtered stream | Goo |
| Text | Codons | Contains a collection of text fragments | String |
| Domain of Total DNA Sequence | Sub DNA | Domain relative to the location in the total DNA sequence based on the input refernce domain | Interval |
| Domain of RNA | Sub RNA | Numeric domain between {A} and {B} | Interval |
| Domain of Amino Acids | Sub AA | Numeric domain between {A} and {B} | Interval |
Site design © Robin Rodricks.
Alba and associated data © 2023 Ryan Hoover.
Rhinoceros and Grasshopper are registered trademarks of Robert McNeel & Associates.
Hosted by GitHub